chr5:1267241:T>A Detail (hg38) (TERT)

Information

Genome

Assembly Position
hg19 chr5:1,267,356-1,267,356 View the variant detail on this assembly version.
hg38 chr5:1,267,241-1,267,241

HGVS

Type Transcript Protein
RefSeq NM_001193376.1:c.2583-706A>T
NM_198253.2:c.2583-706A>T
Ensemble ENST00000310581.10:c.2583-706A>T
Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics Show details

Frequency

JP HGVD:[No Data.]
ToMMo:0.311
NCBN:[No Data.]
NCBN(Hondo):[No Data.]
NCBN(Ryukyu):[No Data.]
East asia ExAC:[No Data.]

Prediction

ClinVar

Clinical Significance
Review star [No Data.]
Show details
Links
Type Database ID Link
Gene MIM 187270 OMIM
HGNC 11730 HGNC
Ensembl ENSG00000164362 Ensembl
NCBI NCBI
Gene Cards Gene Cards
OncoKB OncoKB
Type Database ID Link
Variant TogoVar tgv20010736 TogoVar
COSMIC
MONDO
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
Score Disease name Description Source Pubmed Links
<0.001 breast carcinoma Several TL-related single nucleotide polymorphisms had modest association with b... BeFree 23629941 Detail
<0.001 breast carcinoma Several TL-related single nucleotide polymorphisms had modest association with b... BeFree 23629941 Detail
0.005 Malignant neoplasm of breast Several TL-related single nucleotide polymorphisms had modest association with b... BeFree 23629941 Detail
0.007 Malignant neoplasm of breast Several TL-related single nucleotide polymorphisms had modest association with b... BeFree 23629941 Detail
0.008 Malignant neoplasm of breast Several TL-related single nucleotide polymorphisms had modest association with b... BeFree 23629941 Detail
0.138 Malignant neoplasm of breast Several TL-related single nucleotide polymorphisms had modest association with b... BeFree 23629941 Detail
0.009 breast carcinoma Several TL-related single nucleotide polymorphisms had modest association with b... BeFree 23629941 Detail
<0.001 breast carcinoma Several TL-related single nucleotide polymorphisms had modest association with b... BeFree 23629941 Detail
Annotation

Annotations

DescrptionSourceLinks
Several TL-related single nucleotide polymorphisms had modest association with breast cancer risk ov... DisGeNET Detail
Several TL-related single nucleotide polymorphisms had modest association with breast cancer risk ov... DisGeNET Detail
Several TL-related single nucleotide polymorphisms had modest association with breast cancer risk ov... DisGeNET Detail
Several TL-related single nucleotide polymorphisms had modest association with breast cancer risk ov... DisGeNET Detail
Several TL-related single nucleotide polymorphisms had modest association with breast cancer risk ov... DisGeNET Detail
Several TL-related single nucleotide polymorphisms had modest association with breast cancer risk ov... DisGeNET Detail
Several TL-related single nucleotide polymorphisms had modest association with breast cancer risk ov... DisGeNET Detail
Several TL-related single nucleotide polymorphisms had modest association with breast cancer risk ov... DisGeNET Detail

Overlapped Transcript

Gene Transcript ID Chromosome Start Stop Links
Gene
-
dbSNP
rs4246742 dbSNP
Genome
hg38
Position
chr5:1,267,241-1,267,241
Variant Type
snv
Reference Allele
T
Alternative Allele
A
ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
PASS
Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
rs4246742
Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
0.3112
Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
5215
Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
16760
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